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USC Team Maps Four Hidden Neuron Layers in Mouse Hippocampal CA1

Single-molecule RNA mapping reveals continuous bands, enabling an open CA1 atlas.

Overview

  • Researchers at USC's Stevens INI report four thin, continuous layers of distinct CA1 pyramidal neuron types in mice, published in Nature Communications.
  • The team mapped 58,065 neurons and visualized more than 330,000 RNA molecules using RNAscope with high-resolution imaging to define layer-specific gene signatures.
  • These layers form 3D sheets that shift position and thickness along the hippocampal axis, producing region-specific mixes of neuron types.
  • An open CA1 cell-type atlas and interactive 3D visualizations are now available via the Hippocampus Gene Expression Atlas and the Schol-AR app.
  • The framework offers testable clues to selective neuron vulnerability in Alzheimer’s disease and epilepsy, with next steps to confirm the pattern in humans and link layers to behavior.