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Ancient DNA From Southern Africa Reveals Long-Isolated Homo Sapiens Lineage

A Nature analysis of 28 ancient genomes identifies adaptations that clarify the region’s role in our species’ evolution.

Overview

  • Researchers sequenced genome-wide DNA from 28 individuals dated to roughly 10,200–150 years ago, revealing a southern African population that remained largely genetically separate for at least about 200,000 years.
  • Clear signs of outside gene flow appear only around 1,400 years ago, when ancestry from East and West African groups becomes detectable in southern African individuals.
  • Across archaeological layers spanning about 10,000 years, the individuals are genetically consistent despite shifts in toolmaking, indicating cultural change without large-scale population replacement.
  • The genomes preserve extensive early human diversity and include Homo sapiens–specific variants affecting kidney function, immune responses and neuron growth, alongside three southern-only variants linked to UV protection and pigmentation.
  • Roughly 80% of this ancient genetic legacy persists in present-day Khoe-San populations, and southern-derived variants appear in individuals from present-day Malawi about 8,000 years ago, consistent with northward movements during favorable climates.